A set of SPARQL examples that are used in LOTUS
Compounds found in marine taxa and their references.
PREFIX hint: <http://www.bigdata.com/queryHints#>
PREFIX p: <http://www.wikidata.org/prop/>
PREFIX pr: <http://www.wikidata.org/prop/reference/>
PREFIX prov: <http://www.w3.org/ns/prov#>
PREFIX ps: <http://www.wikidata.org/prop/statement/>
PREFIX wd: <http://www.wikidata.org/entity/>
PREFIX wdt: <http://www.wikidata.org/prop/direct/>
#title: Compounds found in marine taxa and their references.
SELECT DISTINCT ?compound ?compound_smiles ?reference ?reference_title ?reference_doi WHERE {
{
SELECT ?child WHERE {
{ ?child (wdt:P171*) wd:Q152. } # fishes
UNION
{ ?child (wdt:P171*) wd:Q93315. } # cyanobacteria
UNION
{ ?child (wdt:P171*) wd:Q103169. } # red algae
UNION
{ ?child (wdt:P171*) wd:Q264543. } # chlorohyta
UNION
{ ?child (wdt:P171*) wd:Q18960. } # sponges
UNION
{ ?child (wdt:P171*) wd:Q28524. } # corals
}
}
hint:Prior hint:runFirst true.
?compound wdt:P233 ?compound_smiles;
p:P703[
ps:P703 ?child;
(prov:wasDerivedFrom/pr:P248) ?reference ].
?reference wdt:P356 ?reference_doi;
wdt:P1476 ?reference_title.
}
graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
v1("?child")
v2("?compound"):::projected
v3("?compound_smiles"):::projected
v4("?reference"):::projected
v5("?reference_doi"):::projected
v6("?reference_title"):::projected
a1((" "))
a2((" "))
c7(["wd:Q28524"]):::iri
c8([http://www.bigdata.com/queryHints#Prior]):::iri
c4(["wd:Q103169"]):::iri
c2(["wd:Q152"]):::iri
c6(["wd:Q18960"]):::iri
c10(["true^^xsd:boolean"]):::literal
c3(["wd:Q93315"]):::iri
c5(["wd:Q264543"]):::iri
subgraph union0[" Union "]
subgraph union0l[" "]
style union0l fill:#abf,stroke-dasharray: 3 3;
subgraph union1[" Union "]
subgraph union1l[" "]
style union1l fill:#abf,stroke-dasharray: 3 3;
subgraph union2[" Union "]
subgraph union2l[" "]
style union2l fill:#abf,stroke-dasharray: 3 3;
subgraph union3[" Union "]
subgraph union3l[" "]
style union3l fill:#abf,stroke-dasharray: 3 3;
subgraph union4[" Union "]
subgraph union4l[" "]
style union4l fill:#abf,stroke-dasharray: 3 3;
v1 --"p:direct/P171"--> c7
end
subgraph union4r[" "]
style union4r fill:#abf,stroke-dasharray: 3 3;
v1 --"p:direct/P171"--> c6
end
union4r <== or ==> union4l
end
end
subgraph union3r[" "]
style union3r fill:#abf,stroke-dasharray: 3 3;
v1 --"p:direct/P171"--> c5
end
union3r <== or ==> union3l
end
end
subgraph union2r[" "]
style union2r fill:#abf,stroke-dasharray: 3 3;
v1 --"p:direct/P171"--> c4
end
union2r <== or ==> union2l
end
end
subgraph union1r[" "]
style union1r fill:#abf,stroke-dasharray: 3 3;
v1 --"p:direct/P171"--> c3
end
union1r <== or ==> union1l
end
end
subgraph union0r[" "]
style union0r fill:#abf,stroke-dasharray: 3 3;
v1 --"p:direct/P171"--> c2
end
union0r <== or ==> union0l
end
c8 --http://www.bigdata.com/queryHints#runFirst--> c10
v2 --"p:direct/P233"--> v3
a1 --"p:statement/P703"--> v1
a1 --"prov:wasDerivedFrom"--> a2
a2 --"p:reference/P248"--> v4
v2 --"p:P703"--> a1
v4 --"p:direct/P356"--> v5
v4 --"p:direct/P1476"--> v6